Root species for th2 (ENSTRUG00000014467) (Fugu) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 1962 homologs (oldest homol. - dupl. node) 1036 homologs (dupl. node) 609 homologs |
Chordata | ~550 Mya | 393 species | 605 homologs |
Vertebrata | ~550 Mya | 389 species | 601 homologs |
Gnathostomata | ~473 Mya | 385 species | 597 homologs (dupl. node) 219 homologs |
Euteleostomi | ~420 Mya | 383 species | 217 homologs |
Actinopterygii | ~386 Mya | 129 species | 149 homologs |
Neopterygii | ~314 Mya | 127 species | 147 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 146 homologs |
Clupeocephala | ~229 Mya | 121 species | 142 homologs |
Euteleosteomorpha | ~206 Mya | 101 species | 115 homologs |
Acanthomorphata | ~148 Mya | 87 species | 89 homologs |
Euacanthomorphacea | ~132 Mya | 85 species | 87 homologs |
Percomorphaceae | ~128 Mya | 83 species | 85 homologs |
Percomorphaceae_B | ~128 Mya | 81 species | 83 homologs |
Percomorphaceae_C | ~128 Mya | 35 species | 35 homologs |
Eupercaria | ~110 Mya | 19 species | 19 homologs |
Tetraodontidae | ~51 Mya | 3 species | 3 homologs |
Fugu | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'