DYOGEN group
web-code version: 2017-06-13
database version: 01.01
Contact us.
|
|
|
|
Enter a gene name (Ensembl nomenclature or approved gene symbol)
You can restrict the search to one species (ancestral or modern).
Selected example: BL22073
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.
Once a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologous and paralogous copies in all the other sequenced metazoan genomes. Moreover, Genomicus stores and displays the predicted ancestral genome structure in all the ancestral species within the phylogenetic range of interest.
All the data on extant species displayed in this browser are from Ensembl and from the European Branchiostoma lanceolatum consortium .
| Number of extant species | 12 |
|---|---|
| Number of extant genes | 281605 |
| Number of ancestral species | 11 |
| Number of ancestral genes | 219021 |
| Number of ancestral synteny blocks | 9610 |
 |
Welcome to the European Amphioxus Genomicus Server. |
| PhyloView | AlignView |
 |
 |
| Phyldiag View | Matrix View | Karyotype View |
 |
 |
 |
 |
 |
 |
 |
 |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'