Root species for fgf1a (ENSDARG00000017542) (Zebrafish) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
128 species ![]() |
|
Bilateria | ![]() |
126 species ![]() |
245 homologs (oldest homol.) ![]() |
Olfactores | ![]() |
122 species ![]() |
242 homologs ![]() |
Craniata | ![]() |
118 species ![]() |
241 homologs ![]() |
Euteleostomi | ![]() |
116 species ![]() |
239 homologs (dupl. node) ![]() 39 homologs ![]() |
Neopterygii | ![]() |
21 species ![]() |
38 homologs ![]() |
Clupeocephala | ![]() |
19 species ![]() |
37 homologs (dupl. node) ![]() 19 homologs ![]() |
Otophysa | ![]() |
3 species ![]() |
3 homologs ![]() |
Zebrafish | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'